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banyan

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Banyan is a tool for comparing and
tracking global trends in the full
COVID-19 genomic dataset. Users can
explore a full phylogenetic tree,
trajectory and prevalence charts,
as well as mutation and substitution
data visualization.

The current version of Banyan requires Firefox.
 Or use this link to see a preview.

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banyan

⊞Overview

⧉Selections

Phylogeny

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Name

⊠

All 0 variants

Mutations

All 0 mutations

Geography

All 0 countries

sequences

Across 184 countrycountries

dd mmm yyyy

dd mmm yyyy

Variants

Category0

the description goes here

B.1.1.7

0%

Concern Interest Monitoring 1

Mutations

Category0

0%

Countries

Category0

the description goes here

Country
0

Prevalence

Compare Mutations

Mutation timeline Select only one variant in order to view the timeline

World

00%of total

0 mutations appear in at least 75% of 1,000 sequences.

Mutation
◇ ↓ Sorting
Sequences
◇ ↓ Sorting
Percent
◇ ↓ Sorting
Specificity
◇ ↓ Sorting
Indicates how tightly the mutation corresponds to this variant.
Presence in variant over time
100%

0 mutations appear in at least 75% of sequences.

Reference Variant ### pct less than 75% 75-89% 90-94% 95% and higher

Country or subdivision

Parent country
0total sequences
 - 

Tree

Comparisons

Sequences displayed 0
▼
0options

Banyan is a tool for comparing and tracking global trends in the full COVID-19 genomic dataset. Users can explore a full phylogenetic tree, trajectory and prevalence charts, as well as mutation and substitution data visualization.

Development

Banyan is built by Fathom Information Design with support from the Sabeti Lab.

Your feedback is welcomed and can be sent to .

About the data

We gratefully acknowledge all data contributors, i.e. the Authors and their Originating laboratories responsible for obtaining the specimens, and their Submitting laboratories for generating the genetic sequence and metadata and sharing same via the GISAID Initiative1 on which this research is based.

GISAID data on this website is subject to GISAID's Terms and Conditions.

→Data sources & currency

Data shown in the phylogenetic tree as of 00.00.21.

Sequence metadata as of 00.00.21.

Mutation metadata is parsed from the GISAID msa file using björn. The msa file was downloaded 00.00.21.

Lineage aliases and descriptions were downloaded from Pango 00.00.21.

Variant classifications were copied from the World Health Organization page on Tracking SARS-CoV-2 variants on 00.00.21.

→System requirements

This tool is optimized for use in Chrome and Firefox. Browsers such as Safari are unsupported and unable to load the tool.

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1Elbe, S., and Buckland-Merrett, G. (2017) Data, disease and diplomacy: GISAID’s innovative contribution to global health. Global Challenges, 1:33-46. DOI: 10.1002/gch2.1018 PMCID: 31565258

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